DOKK / manpages / debian 10 / snap / snap-hmm.1.en
SNAP(1) User Commands SNAP(1)

snap-hmm - Semi-HMM-based Nucleic Acid Parser

snap-hmm [options] <HMM file> <FASTA file> [options]

report useful information
treat lowercase as N
predict on plus strand only
predict on minus strand only
output annotation as GFF
output annotation as ACED
do not send progress to STDERR
create FASTA file of proteins
create FASTA file of transcripts
external definitions
name for the gene [default snap]
October 2013 snap 2010-07-28