NAME

surankco-training - training of random forest using contig features and contig scores

SYNOPSIS

surankco-training [options]

DESCRIPTION

Training of random forest using contig features from surankco-feature(1) and contig scores from surankco-score(1).

OPTIONS

-f FEATURES, --features=FEATURES

Indicate a list of surankco feature files (comma separated), correct suffixes are mandatory ("*.features.txt")

-d DIRECTORY, --directory=DIRECTORY

Indicate a directory containing surankco feature files ("*.features.txt")

-o OUTPUT.FILENAME, --output.filename=OUTPUT.FILENAME

Indicate a name for the export of the random forest classifiers (default = "surankco_rfs.RData")

-e EXPONENTIAL.QUANTILE, --exponential.quantile=EXPONENTIAL.QUANTILE

Indicate an exponential distribution quantile to divide scores (default: 0.25)

-m MANUAL.THRESHOLDS, --manual.thresholds=MANUAL.THRESHOLDS

Indicate manual thresholds instead of quantiles, one per score each (comma separated) in the same order as in the score file

-h, --help

Show this help message and exit

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.