NAME

contig_to_chr_coords - tophat component taking NCBI seq_contig file and maps contig coords

DESCRIPTION

contig_to_chr_coords: Takes the NCBI seq_contig file and maps contig coords to whole chromosome coords in a GTF, GFF, or BED file

contig_to_chr_coords.py <format_flag> <seq_contig.md> <junctions.bed|transcripts.gff|transcripts.gtf>

for help use --help