| BAM-READ(1) | User Commands | BAM-READ(1) |
bam-read - Parse bam files after multi-mapping reads have been assigned and aggregate read mapping information by contig.
Currently captured:
- name
- bases mapped
- edit distance
- bridges
- length
- reads mapped
- both mapped
- proper pair
- good
- uncovered bases
- mean mapq
- probability of coverage not being segmented
bam-read version 1.0.0 Usage: bam-read <bam_file> <output_csv> <nullprior (optional)>
example: bam-read in.bam out.csv 0.95
Usage: bam-read <bam_file> <output_csv> <nullprior (optional)>
example: bam-read in.bam out.csv 0.95
| July 2018 | bam-read version 1.0.0 |