alignment-distances(1) | alignment-distances(1) |
alignment-distances - Compute distances between alignments.
alignment-distances analysis alignments-file1 [alignments-file2 ...]
Compute distances between alignments.
Compute distances from true.fasta to each in As.fasta:
% alignment-distances score true.fasta As.fasta
Compute distance matrix between all pairs of alignments in all files:
% alignment-distances AxA file1.fasta ... fileN.fasta
Compute all NxN pairwise alignment accuracies, averaged over As:
% alignment-distances NxN true.fasta As.fasta
Find alignment with smallest average distance to other alignments:
% alignment-distances median As.fasta A.fasta
Compare the distances with-in and between the two groups:
% alignment-distances compare A-dist1.fasta A-dist2.fasta
Report distribution of average distance to other alignments:
% alignment-distances distances As.fasta A.fasta
BAli-Phy online help: <http://www.bali-phy.org/docs.php>.
Please send bug reports to <bali-phy-users@googlegroups.com>.
Benjamin Redelings.
Feb 2018 |