DOKK / manpages / debian 11 / bali-phy / mctree-mean-lengths.1.en
tree-mean-lengths(1) tree-mean-lengths(1)

tree-mean-lengths - Compute the mean lengths for branches in the given topology.

tree-mean-lengths tree-file < in-file

Compute the mean lengths for branches in the given topology.

produce help message
tree to re-root
number of tree samples to skip
Read until this number of trees.
Comma-separated taxa to remove
factor by which to subsample
report standard deviation of branch lengths instead of mean
ignore branches not in the specified topology
Don't die if no trees match the topology
Remove partial branches
random seed
Output more log messages on stderr.

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

Benjamin Redelings.

Feb 2018