bedops-starch - manual page for bedops-starch 2.4.39+dfsg1
starch
- citation:
http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract
- https://doi.org/10.1093/bioinformatics/bts277
- binary version: 2.4.39 (typical) (creates archive version: 2.2.0) authors:
Alex Reynolds and Shane Neph
USAGE: starch [ --note="foo bar..." ]
- [ --bzip2 | --gzip ] [ --omit-signature ] [
--report-progress=N ] [ --header ] [
<unique-tag> ] <bed-file>
- * BED input must be sorted lexicographically (e.g., using BEDOPS
sort-bed). * Please use '-' to indicate reading BED data from standard
input. * Output must be directed to a regular file. * The bzip2
compression type makes smaller archives, while gzip extracts
- faster.
- Process Flags
--------------------------------------------------------------------------
--note="foo bar..." Append note to output archive
metadata (optional).
- --bzip2 |
--gzip
- Specify backend compression type (optional, default is bzip2).
- --omit-signature
- Skip generating per-chromosome data integrity signature (optional, default
is to generate signature).
- --report-progress=N
- Report compression progress every N elements per chromosome to standard
error stream (optional)
- Support BED input with custom UCSC track, SAM or VCF headers, or generic
comments (optional).
- <unique-tag>
- Optional. Specify unique identifier for transformed data.
- --version
- Show binary version.
- --help
- Show this usage message.
The full documentation for bedops-starch is maintained as a
Texinfo manual. If the info and bedops-starch programs are
properly installed at your site, the command
- info bedops-starch
should give you access to the complete manual.