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Bio::Tradis::CombinePlots(3pm) User Contributed Perl Documentation Bio::Tradis::CombinePlots(3pm)

Bio::Tradis::CombinePlots - Combine multiple plotfiles and generate updated statistics for the combined files

version 1.4.5

Takes a tab-delimited file with an ID as the first column followed by a list of plotfiles to combine per row. The ID will be used to name the new plotfile and as an identifier in the stats file, so ensure these are unique.

For example, an input file named plots_to_combine.txt:

    tradis1 plot1.1.gz  plot1.2.gz plot1.3.gz
    tradis2 plot2.1.gz  plot2.2.gz
    tradis3 plot3.1.gz  plot3.2.gz plot3.3.gz   plot3.4.gz

will produce

1. a directory named combined with 3 files - tradis1.insertion_site_plot.gz, tradis2.insertion_site_plot.gz, tradis3.insertion_site_plot.gz 2. a stats file named plots_to_combine.stats

   use Bio::Tradis::CombinePlots;
   
   my $pipeline = Bio::Tradis::CombinePlots->new(plotfile => 'abc');
   $pipeline->combine;

Carla Cummins <path-help@sanger.ac.uk>

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007
2020-01-11 perl v5.30.0