Bio::Tradis::Map(3pm) | User Contributed Perl Documentation | Bio::Tradis::Map(3pm) |
Bio::Tradis::Map - Perform mapping
version 1.4.5
Takes a reference genome and indexes it. Maps given fastq files to ref.
use Bio::Tradis::Map; my $pipeline = Bio::Tradis::Map->new(fastqfile => 'abc', reference => 'abc'); $pipeline->index_ref(); $pipeline->do_mapping();
For more information on the mapping and indexing options discussed here, see the SMALT manual <ftp://ftp.sanger.ac.uk/pub4/resources/software/smalt/smalt-manual-0.7.4.pdf>
Carla Cummins <path-help@sanger.ac.uk>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
2020-01-11 | perl v5.30.0 |