DOKK / manpages / debian 11 / bitseq / extractTranscriptInfo.1.en
EXTRACTTRANSCRIPTINFO.PY(1) User Commands EXTRACTTRANSCRIPTINFO.PY(1)

extractTranscriptInfo.py - extracts information about transcripts from reference Fasta file

extractTranscriptInfo.py [options] <inputFile> <outputFile>

This program extracts information about transcripts from reference Fasta file. This is partially replaced by using SAM header, which however does not include information about transcript-gene grouping. Current version of parseAlignment extracts this information from a reference sequence file (making this script obsolete).

show this help message and exit
Verbose output
Type of file to parse: ensembl, cuff, other
September 2019 extractTranscriptInfo.py 0.7.5+dfsg