DOKK / manpages / debian 11 / bowtie2 / bowtie2-inspect.1.en
BOWTIE2-INSPECT(1) User Commands BOWTIE2-INSPECT(1)

bowtie2-inspect - wrapper for bowtie2-inspect-* index

bowtie2-inspect [options]* <bt2_base>

Bowtie 2 version 2.4.2 by Ben Langmead (langmea@cs.jhu.edu, www.cs.jhu.edu/~langmea)

<bt2_base>
bt2 filename minus trailing .1.bt2/.2.bt2
By default, prints FASTA records of the indexed nucleotide sequences to standard out. With -n, just prints names. With -s, just prints a summary of the index parameters and sequences.

force inspection of the 'large' index, even if a 'small' one is present.
use the debug binary; slower, assertions enabled
log the issued command
Number of characters across in FASTA output (default: 60)
Print reference sequence names only
Print summary incl. ref names, lengths, index properties
Verbose output (for debugging)
print detailed description of tool and its options
March 2021 bowtie2-inspect 2.4.2