domainreso - Remove low resolution domains from a DCF file.
domainreso -cpdbpath dirlist
-dcfinfile infile
-threshold float
-dcfoutfile outfile
domainreso -help
domainreso is a command line program from EMBOSS
(“the European Molecular Biology Open Software Suite”). It is
part of the "PROTEIN:3D STRUCTURE" command group(s).
-cpdbpath dirlist
This option specifies the location of domain CCF file
(clean coordinate files) (input). A 'clean cordinate file' contains coordinate
and other data for a single PDB file or a single domain from SCOP or CATH, in
CCF format (EMBL-like). The files, generated by using PDBPARSE (pdb files) or
DOMAINER (domains), contain 'cleaned-up' data that is self-consistent and
error-corrected. Records for residue solvent accessibility and secondary
structure are added to the file by using PDBPLUS. Default value: ./
-dcfinfile infile
This option specifies the name of DCF file (domain
classification file) (input). A 'domain classification file' contains
classification and other data for domains from SCOP or CATH, in DCF format
(EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain
sequence information can be added to the file by using DOMAINSEQS.
-threshold float
This option specifies the threshold for inclusion
(Angstroms). Domains exceeding the threshold for inclusion (Angstroms) will
not be given in the output file. Default value: 2.8
-dcfoutfile outfile
This option specifies the name of DCF file (domain
classification file) (output). A 'domain classification file' contains
classification and other data for domains from SCOP or CATH, in DCF format
(EMBL-like). The files are generated by using SCOPPARSE and CATHPARSE. Domain
sequence information can be added to the file by using DOMAINSEQS. Default
value: test.scop
Bugs can be reported to the Debian Bug Tracking system
(http://bugs.debian.org/emboss), or directly to the EMBOSS developers
(http://sourceforge.net/tracker/?group_id=93650&atid=605031).
domainreso is fully documented via the tfm(1) system.
Debian Med Packaging Team
<debian-med-packaging@lists.alioth.debian.org>
Wrote the script used to autogenerate this manual
page.
This manual page was autogenerated from an Ajax Control Definition
of the EMBOSS package. It can be redistributed under the same terms as
EMBOSS itself.