DOKK / manpages / debian 11 / emboss / dbifasta.1e.en
DBIFASTA(1e) EMBOSS Manual for Debian DBIFASTA(1e)

dbifasta - Index a fasta file database

dbifasta -dbname string -idformat list -directory directory -filenames string -release string -date string -fields list -exclude string -maxindex integer -sortoptions string -systemsort boolean -cleanup boolean -outfile outfile -indexoutdir outdir

dbifasta -help

dbifasta is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Utils:Database indexing" command group(s).

-dbname string

-idformat list

Default value: idacc

-directory directory

Default value: .

-filenames string

Default value: *.dat

-release string

Default value: 0.0

-date string

Default value: 00/00/00

-fields list

Default value: acc

-exclude string

-maxindex integer

-sortoptions string

Sort options, typically '-T .' to use current directory for work files and '-k 1,1' to force GNU sort to use the first field Default value: -T . -k 1,1

-systemsort boolean

Default value: Y

-cleanup boolean

Default value: Y

-outfile outfile

-indexoutdir outdir

Default value: .

Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

dbifasta is fully documented via the tfm(1) system.

Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>

Wrote the script used to autogenerate this manual page.

This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.

05/11/2012 EMBOSS 6.4.0