DOKK / manpages / debian 11 / fastaq / fastaq-scaffolds_to_contigs.1.en
FASTAQ-SCAFFOLDS_TO_CONTIGS(1) User Commands FASTAQ-SCAFFOLDS_TO_CONTIGS(1)

fastaq_scaffolds_to_contigs - Creates a file of contigs from a file of scaffolds

usage: fastaq_scaffolds_to_contigs [options] <infile> <outfile>

Creates a file of contigs from a file of scaffolds - i.e. breaks at every gap in the input

Name of input file
Name of output contigs file

show this help message and exit
Use this to enumerate contig names 1,2,3,... within each scaffold
April 2020 fastaq 3.17.0