DOKK / manpages / debian 11 / fastaq / fastaq-search_for_seq.1.en
FASTAQ-SEARCH_FOR_SEQ(1) User Commands FASTAQ-SEARCH_FOR_SEQ(1)

fastaq_search_for_seq - Find all exact matches to a string (and its reverse complement)

usage: fastaq_search_for_seq [options] <infile> <outfile> <search_string>

Searches for an exact match on a given string and its reverse complement, in every sequence of input sequence file. Case insensitive. Guaranteed to find all hits

Name of input file
Name of outputfile. Tab-delimited output: sequence name, position, strand
String to search for in the sequences

show this help message and exit
April 2020 fastaq 3.17.0