| Bio::DB::GFF::Aggregator::match_gap(3pm) | User Contributed Perl Documentation | Bio::DB::GFF::Aggregator::match_gap(3pm) |
Bio::DB::GFF::Aggregator::match_gap -- GFF3 match aggregator
------------------------------------------------- Aggregator method: match_gap Main method: match Sub methods: match -------------------------------------------------
This aggregator is used for GFF3 style gapped alignments, in which there is a single feature of method 'match' with a 'Gap' attribute.
The 'Gap' attribute's format consists of a series of (operartion,length) pairs separated by space characters, for example: 'M8 D3 M6'. (see GFF reference for complete explanation)
This module only recognizes the M and D operators, which should be sufficient for simple nucleotide to nucleotide alignments.
None reported.
Bio::DB::GFF, Bio::DB::GFF::Aggregator
Dmitri Bichko
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
| 2020-02-16 | perl v5.30.0 |