GLISTCOMPARE(1) | GenomeTester User Manuals | GLISTCOMPARE(1) |
glistcompare - generate union, intersection or difference of k-mers from two list files
glistcompare <INPUTLIST1> <INPUTLIST2> [OPTIONS]
-v, --version - print version information and exit
-h, --help - print this usage screen and exit
-u, --union - union of input lists
-i, --intersection - intersection of input lists
-d, --difference - difference of input lists
-dd, --double_difference - double difference of input lists
-du, --diff_union - subtract first list from the second and finds difference
-c, --cutoff NUMBER - specify frequency cut-off (default 1)
-o, --outputname STRING - specify output name (default "out")
-ss --subset METHOD SIZE - make subset with given method (rand_unique)
--count_only - output count of k-mers instead of k-mers themself
--disable_scouts - disable list read-ahead in background thread
-D - increase debug level
You could find some usage examples in /usr/share/doc/genometester/README.GenomeTester4.md
glistquery(1), glistmaker(1), gmer_caller(1), gmer_counter(1)
31 May 2018 | GenomeTester |