gt-seqstat - Calculate statistics for fasta file(s).
gt seqstat [options] file [...]
-v [yes|no]
be verbose (default: no)
-distlen [yes|no]
show distribution of sequence length (default: no)
-b [value]
bucket size for distlen option (default: 100)
-binary [yes|no]
use a binary format for distlen output output filename:
<first_input_filename>.distlen bucketsize: 1 (default: no)
-contigs [yes|no]
summary of contigs set statistics (default: yes)
-nstats
list of N-values to calculate statistics for, terminated
by --; if none given, N50 and N80 will be calculated
-astretch [yes|no]
show distribution of A-substrings (default: no)
-genome [value]
set genome length for NG50/NG80 calculation (default:
0)
-help
display help for basic options and exit
-help+
display help for all options and exit
-version
display version information and exit
Report bugs to
https://github.com/genometools/genometools/issues.