positional arguments:

INPUT_FILE

dataset files

INPUT_FILE

LEfSe output file

OUTPUT_FILE

the file for the output (the zip file if an archive is required, the output directory otherwise)

optional arguments:

-h, --help

show this help message and exit

--width WIDTH

--height HEIGHT

--top TOP

set maximum y limit (-1.0 means automatic limit)

--bot BOT

set minimum y limit (default 0.0, -1.0 means automatic limit)

--title_font_size TITLE_FONT_SIZE

--class_font_size CLASS_FONT_SIZE

--class_label_pos {up,down}

--subcl_mean {y,n}

--subcl_median {y,n}

--font_size FONT_SIZE

-n flt

unused

--format {png,pdf,svg}

the format for the output file

-f {all,diff,one}

whether to plot all features (all), only those differentially abundant according to LEfSe or only one (the one given with --feature_name)

--feature_name FEATURE_NAME

The name of the feature to plot (levels separated by .)

--feature_num FEATURE_NUM

The number of the feature to plot

--archive {zip,none}

--background_color {k,w}

set the color of the background

--dpi DPI