Ace::Graphics::Glyph::transcript(3pm) | User Contributed Perl Documentation | Ace::Graphics::Glyph::transcript(3pm) |
Ace::Graphics::Glyph::transcript - The "gene" glyph
See L<Ace::Graphics::Panel> and L<Ace::Graphics::Glyph>.
This glyph draws a series of filled rectangles connected by up-angled connectors or "hats". The rectangles indicate exons; the hats are introns. The direction of transcription is indicated by a small arrow at the end of the glyph, rightward for the + strand.
The feature must respond to the exons() and optionally introns() methods, or it will default to the generic display. Implied introns (not returned by the introns() method) are drawn in a contrasting color to explicit introns.
In addition to the common options, the following glyph-specific option is recognized:
Option Description Default ------ ----------- ------- -implied_intron_color The color to use for gaps gray not returned by the introns() method. -draw_arrow Whether to draw arrowhead true indicating direction of transcription.
Please report them.
Ace::Sequence, Ace::Sequence::Feature, Ace::Graphics::Panel, Ace::Graphics::Track, Ace::Graphics::Glyph::anchored_arrow, Ace::Graphics::Glyph::arrow, Ace::Graphics::Glyph::box, Ace::Graphics::Glyph::primers, Ace::Graphics::Glyph::segments, Ace::Graphics::Glyph::toomany, Ace::Graphics::Glyph::transcript,
Lincoln Stein <lstein@cshl.org>.
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.
2021-02-20 | perl v5.32.1 |