| Bio::DB::SoapEUtilities::FetchAdaptor::species(3pm) | User Contributed Perl Documentation | Bio::DB::SoapEUtilities::FetchAdaptor::species(3pm) |
Bio::DB::SoapEUtilities::FetchAdaptor::species - Fetch adaptor for 'taxonomy' efetch SOAP messages
Imported by Bio::DB::SoapEUtilities::FetchAdaptor as required.
Returns an iterator over Bio::Species objects:
my $fac = Bio::DB::SoapEUtilities->new; my $taxio = $fac->efetch(-db => 'taxonomy', -id => 1394)->run(-auto_adapt=>1); my $sp = $taxio->next_species; $sp->binomial; # returns 'Bacillus caldolyticus'
To find out the object type returned:
$class = $seqio->obj_class; # $class is 'Bio::Species'
as for all Bio::DB::SoapEUtilities::FetchAdaptor objects.
Bio::DB::SoapEUtilities, Bio::DB::SoapEUtilities::FetchAdaptor
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
| 2021-01-06 | perl v5.32.0 |