NAME

mecat - Generate config file or assemble, trim or correct SMRT data

SYNOPSIS

mecat correct|assemble|config cfg_fname

DESCRIPTION

MECAT (v2) is an ultra-fast and accurate mapping, error correcting and de novo assembly tools for single molecula sequencing (SMRT) reads.

The parameters are defined as below:

correct:

Correct rawreads

trim:

Trim corrected reads

assemble:

Generate contigs

config:

Generate default config file