megahit_core_no_hw_accel - ultra-fast and memory-efficient
meta-genome assembler
megahit_core_no_hw_accel <sub_program> [sub
options]
- sub-programs:
- assemble
- assemble from SdBG
- local
- local asssembly
- iterate
- extract iterative edges
- buildlib
- build read library
- count
- kmer counting
- read2sdbg
- build sdbg from reads
- seq2sdbg
- build sdbg from megahit contigs + edges
- contig2fastg
- convert MEGAHIT's k*.contigs.fa to fastg format
- readstat
- calculate read stats (# of reads, bases, longest, shortest, average)
- filterbylen
- filter contigs by length
- checkcpu
- check whether the run-time CPU supports POPCNT and BMI2
- checkpopcnt
- check whether the run-time CPU supports POPCNT
- checkbmi2
- check whether the run-time CPU supports BMI2
- dumpversion
- dump version
- kmax
- the largest k value supported
This manpage was written by Shayan Doust for the Debian
distribution and can be used for any other usage of the program.