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mia-2dmyoseries-dice(1) General Commands Manual mia-2dmyoseries-dice(1)

mia-2dmyoseries-dice - Evaluate the dice index between segmentations.

mia-2dmyoseries-dice -i <input> [options]

mia-2dmyoseries-dice This program is used to evaluate the per-frame dice index of segmented regions of an image with respect to the segmentation of a reference frame from the same series.

original segmentation set

images to skip atthe bgin of the series

reference image

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

trace ‐ Function call trace
debug ‐ Debug output
info ‐ Low level messages
message ‐ Normal messages
warning ‐ Warnings
fail ‐ Report test failures
error ‐ Report errors
fatal ‐ Report only fatal errors
print copyright information

print this help

-? --usage
print a short help

print the version number and exit

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

Evaluate the dice index of segmentation set segment.set with reference 30 and skipping the first two frames.

mia-2dmyoseries-dice -i segment.set -r 30 -k 2

Gert Wollny

This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.

v2.4.7 USER COMMANDS