DOKK / manpages / debian 11 / mia-tools / mia-3dimagecreator.1.en
mia-3dimagecreator(1) General Commands Manual mia-3dimagecreator(1)

mia-3dimagecreator - Create a synthetic 3D image.

mia-3dimagecreator -o <out-file> [options]

mia-3dimagecreator This program creates a 3D image that contains an object created by one of the object creator plug-ins (creator/3dimage)

output file for create object
For supported file types see PLUGINS:3dimage/io
size of the object

input pixel type

bit ‐ binary data
sbyte ‐ signed 8 bit
ubyte ‐ unsigned 8 bit
sshort ‐ signed 16 bit
ushort ‐ unsigned 16 bit
sint ‐ signed 32 bit
uint ‐ unsigned 32 bit
slong ‐ signed 64 bit
ulong ‐ unsigned 64 bit
float ‐ floating point 32 bit
double ‐ floating point 64 bit
none ‐ no pixel type defined
object to be created
For supported plugins see PLUGINS:3dimage/creator

verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:

trace ‐ Function call trace
debug ‐ Debug output
info ‐ Low level messages
message ‐ Normal messages
warning ‐ Warnings
fail ‐ Report test failures
error ‐ Report errors
fatal ‐ Report only fatal errors
print copyright information

print this help

-? --usage
print a short help

print the version number and exit

Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).

3D lattic creation program, supported parameters are:

fx = 16; float in [1, 64]
frequency in x-dir.

fy = 16; float in [1, 64]
frequency in y-dir.

fz = 16; float in [1, 64]
frequency in z-dir.

3D sphere creation program, supported parameters are:

f = 2; float in [0, 10]
spherical change frequency.

p = 2; float in [0.1, 100]
spherical shape parameter (2.0 = sphere).

Analyze 7.5 image

Recognized file extensions: .HDR, .hdr

Supported element types:
unsigned 8 bit, signed 16 bit, signed 32 bit, floating point 32 bit, floating point 64 bit

Virtual IO to and from the internal data pool

Recognized file extensions: .@

Dicom image series as 3D

Recognized file extensions: .DCM, .dcm

Supported element types:
signed 16 bit, unsigned 16 bit

HDF5 3D image IO

Recognized file extensions: .H5, .h5

Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit

INRIA image

Recognized file extensions: .INR, .inr

Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

MetaIO 3D image IO using the VTK implementation (experimental).

Recognized file extensions: .MHA, .MHD, .mha, .mhd

Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

NIFTI-1 3D image IO. The orientation is transformed in the same way like it is done with 'dicomtonifti --no-reorder' from the vtk-dicom package.

Recognized file extensions: .NII, .nii

Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, signed 64 bit, unsigned 64 bit, floating point 32 bit, floating point 64 bit

VFF Sun raster format

Recognized file extensions: .VFF, .vff

Supported element types:
unsigned 8 bit, signed 16 bit

Vista 3D

Recognized file extensions: .-, .V, .VISTA, .v, .vista

Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

3D image VTK-XML in- and output (experimental).

Recognized file extensions: .VTI, .vti

Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

3D VTK image legacy in- and output (experimental).

Recognized file extensions: .VTK, .VTKIMAGE, .vtk, .vtkimage

Supported element types:
signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit, signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64 bit

Create an image output.v of size <64,128,256> that contains a lattic with frequencys 8, 16, and 4 in x, y and, z-direction respectively.

mia-3dimagecreator -o lattic.v -j lattic:fx=8,fy=16,fz=4 -s "<64,128,256>"

Gert Wollny

This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the option '--copyright'.

v2.4.7 USER COMMANDS