NAME

mcverter - non-interactive MRI conversion software

SYNOPSIS

mcverter [-h] -o <str> -f <str> [-v] [-q] [-V] [-j] [-x] [-d] [-a] [-n] [-b] [-r] [-u] [-s <str>] [-m <str>] [-F <str>] Input directory or file(s)...

DESCRIPTION

-h, --help

Show this help message

-o, --output=<str>

Output directory for converted files

-f, --format=<str>

Output format: fsl, spm, meta, nifti, analyze, or bv.

-v, --verbose

Verbose mode

-q, --quiet

Quiet mode

-V, --version

Version information

-j, --split_subj

Save each subject to a separate directory

-x, --split_dir

Save each series to a separate directory

-d, --fourd

Save output volumes as 4D files

-a, --ho

Save header only (metaimage only)

-n, --nii

Save files as .nii (nifti/fsl only)

-b, --v16

Save .v16 files (BrainVoyager only)

-r, --rescale

Apply rescale slope and intercept to data

-u, --patientid

Use patient id instead of patient name for output file

-s, --skip=<str>

Skip first 'arg' volumes

-m, --match=<str>

Only convert files whose series descriptions include this string

-F, --fnformat=<str>

Use this format for name of output file:

format = {format element} ; some text = {filesystem-legal characters} ; format element = {some text} , {"%" "PN" | "PI" | "SD" | "ST" | "SI" | "TD" | "SN" | "SQ" | "PR" | "RD"} , {some text} ; or format = {"+" | "-" , "PatientName" | "PatientId" | "SeriesDate" | "SeriesTime" | "StudyId" | "StudyDescription" | "SeriesNumber" | "SequenceName" | "ProtocolName" | "SeriesDescription"

(process:26217): GLib-GObject-WARNING **: 12:19:17.200: invalid (NULL) pointer instance

(process:26217): GLib-GObject-CRITICAL **: 12:19:17.200: g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE (instance)' failed

(process:26217): GLib-GObject-WARNING **: 12:19:17.200: invalid (NULL) pointer instance

(process:26217): GLib-GObject-CRITICAL **: 12:19:17.200: g_signal_handlers_disconnect_matched: assertion 'G_TYPE_CHECK_INSTANCE (instance)' failed