NAME

NanoLyse - remove lambda phage reads from a fastq file

SYNOPSIS

NanoLyse [-h] [-v] [-r REFERENCE] [--logfile LOGFILE]

DESCRIPTION

Remove reads mapping to the lambda genome. Reads fastq from stdin and writes to stdout.

OPTIONS

EXAMPLES:

gunzip -c reads.fastq.gz | NanoLyse | gzip > reads_without_lambda.fastq.gz gunzip -c reads.fastq.gz | NanoLyse | NanoFilt -q 12 | gzip > filtered_reads_without_lambda.fastq.gz gunzip -c reads.fastq.gz | NanoLyse --reference mygenome.fa.gz | gzip > reads_without_mygenome.fastq.gz

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.