DOKK / manpages / debian 11 / picard-tools / PicardCommandLine.1.en
PicardCommandLine(1) User Commands PicardCommandLine(1)

PicardCommandLine - manipulate SAM and BAM files

PicardCommandLine COMMAND [OPTION]...

SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.

Picard Tools includes lots of utilities to manipulate SAM and BAM files. The whole list with a short description can be obtained by running PicardCommandLine -h.

Description of the options and parameters of all commands can be obtained by running PicardCommandLine COMMAND -h.

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Copyright 2010 The Broad Institute

http://broadinstitute.github.io/picard/

September 2015 picard-tools 1.138