Usage of collapse_partials:

-M

Discard monoexonic transcripts.

-U

Discard transcripts which are not oriented.

-V

Print out version.

-d int

Internal exon boundary tolerance. (default 5)

-e int

Three prime exons boundary tolerance. (default 30)

-f int

Five prime exons boundary tolerance. (default 5000)

-h

Print out help message.

-prof string

Write out CPU profiling information.

-t int

Number of cores to use. (default 4)