ktImportGalaxy - explore hierarchical metagenomic data with
zoomable pie charts
Creates a Krona chart based Galaxy taxonomic representations.
ktImportGalaxy \
- [options] \ tax_rep_1[,name_1] \ [tax_rep_2[,name_2]] \ ...
- tax_rep
- Results from the "Fetch taxonomic representation" or "Find
lowest diagnostic rank" tools in Galaxy. By default, separate
datasets will be created for each input (see [-c]).
- name
- A name to show in the list of datasets in the Krona chart (if multiple
input files are present and [-c] is not specified). By default, the
basename of the file will be used.
- [-o <string>]
- Output file name. [Default: 'galaxy.krona.html']
- [-n <string>]
- Name of the highest level. [Default: 'root']
- [-c]
- Combine data from each file, rather than creating separate datasets within
the chart.
- [-d <integer>]
- Maximum depth of wedges to include in the chart.
- [-u <string>]
- URL of Krona resources to use instead of bundling them with the chart
(e.g. "http://krona.sourceforge.net"). Reduces size of charts
and allows updates, though charts will not work without access to this
URL.
- [-qp <string>]
- Url to send query IDs to (instead of listing them) for each wedge. The
query IDs will be sent as a comma separated list in the POST variable
"queries", with the current dataset index (from 0) in the POST
variable "dataset". The url can include additional variables
encoded via GET.