wgsim - short read simulator
wgsim [options] <in.ref.fa>
<out.read1.fq> <out.read2.fq>
- -e FLOAT
- base error rate [0.020]
- -d INT
- outer distance between the two ends [500]
- -s INT
- standard deviation [50]
- -N INT
- number of read pairs [1000000]
- -1 INT
- length of the first read [70]
- -2 INT
- length of the second read [70]
- -r FLOAT
- rate of mutations [0.0010]
- -R FLOAT
- fraction of indels [0.15]
- -X FLOAT
- probability an indel is extended [0.30]
- -S INT
- seed for random generator [-1]
- -h
- haplotype mode
The software was written by Heng Li <lh3@sanger.ac.uk>
This manpage was written by Andreas Tille for the Debian
distribution and can be used for any other usage of the program.