NAME

forge - training program for SNAP

SYNOPSIS

forge [options] <ann> <dna> [options]

OPTIONS

-help

-verbose

-pseudocount <float>

[1] (absolute number for all models)

-pseudoCoding <float> [0.0] (eg. 0.05)

-pseudoIntron <float> [0.0]

-pseudoInter <float>

[0.0]

-min-counts

[0]

-lcmask [-fragmentN]

-utr5-length <int>

[50]

-utr5-offset <int>

[10]

-utr3-length <int>

[50]

-utr3-offset <int>

[10]

-explicit <int>

[250]

-min-intron <int>

[30]

-boost <file>

(file of ID <int>)