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debian 11
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snap
/ snap-hmm.1.en
SNAP(1)
User Commands
SNAP(1)
NAME
snap-hmm - Semi-HMM-based Nucleic Acid Parser
SYNOPSIS
snap-hmm
[
options
] <
HMM file
> <
FASTA file
> [
options
]
OPTIONS
-help
report useful information
-lcmask
treat lowercase as N
-plus
predict on plus strand only
-minus
predict on minus strand only
-gff
output annotation as GFF
-ace
output annotation as ACED
-quiet
do not send progress to STDERR
-aa
<file>
create FASTA file of proteins
-tx
<file>
create FASTA file of transcripts
-xdef
<file>
external definitions
-name
<string>
name for the gene [default snap]
October 2013
snap 2010-07-28