DOKK / manpages / debian 11 / srst2 / VFDB_cdhit_to_csv.1.en
VFDB_CDHIT_TO_CSV(1) User Commands VFDB_CDHIT_TO_CSV(1)

VFDB_cdhit_to_csv - Parse cdhit results

VFDB_cdhit_to_csv [-h] --cluster_file CLUSTER_FILE --infile INFILE --outfile OUTFILE

This tool is part of the SRST2 suite.

Output a comma-separated table of alleles, their inferred gene name (from annotation) and their 90% cluster from CD-HIT analysis

show this help message and exit
cd hit output file (.clstr)
raw sequences file that was input to cdhit (fasta)
output file (csv)

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

June 2016 VFDB_cdhit_to_csv 0.1.8