NAME

subread-fullscan - scans the entire genome and reports all matches of a specified sequence

USAGE

subread-fullscan [options] -i <index_name> <read_string>

Required arguments:

-i <string>

Base name of the index.

read_string

The read bases.

Optional arguments:

-m <float>

The minimum fraction of matched bases in the read, 0.8 by default