DOKK / manpages / debian 12 / bali-phy / alignment-chop-internal.1.en
alignment-chop-internal(1) alignment-chop-internal(1)

alignment-chop-internal - Remove ancestral sequences from an alignment.

alignment-chop-internal [OPTIONS] < alignments-file

Remove ancestral sequences from an alignment.

produce help message
file with sequences and initial alignment
set to 'Codons' to prefer codon alphabets
file with tree that specifies leaves to keep
number of sequences to keep

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

Benjamin Redelings.

Feb 2018