draw-tree - Draw NEWICK (and some other) formatted
files.
draw-tree [OPTIONS] tree file
Draw NEWICK (and some other) formatted files.
- -h, --help
- Produce help message
- -W arg (=8.5),
--width arg (=8.5)
- Page width in inches
- -H arg (=11),
--height arg (=11)
- Page height in inches
- --file
arg
- predicates to examine
- --output arg
(=pdf)
- Type of output to write: tree, topology, mtree, lengths, dot, ps, pdf,
svg
- --out arg
- Output filename (without extension)
- --full
- Consider only full splits by collapsing any partial splits.
- --iterations
arg (=2)
- Number of iterations for layout algorithm
- --font-size
arg (=10)
- Font size for taxon names
- --angle_iterations
arg (=0)
- Number of iterations for layout algorithm with small-angle penalties
- --labels arg
(=horizontal)
- Are the names horizontal or angled?
- --collapse
- Give node lengths evenly to neighboring branches and zero the node
lengths.
- --layout arg
(=graph)
- Layout method: graph, equal-angle, equal-daylight, etc.
- --greedy
- For equal-daylight layout: take as much daylight as possible?
- --tree-layout-initial
- Start an energy layout with positions from the equal-angle layout - only
for multifurcating trees
- --no-shade
- For equal-daylight layout: reject rotations that shade other groups?
- --draw-clouds
arg
- Draw wandering-ranges in MC trees as clouds.
- --seed
arg
- Random seed
- --verbose
- Output more log messages on stderr.
BAli-Phy online help:
<http://www.bali-phy.org/docs.php>.
Please send bug reports to
<bali-phy-users@googlegroups.com>.