DOKK / manpages / debian 12 / bali-phy / summarize-ancestors.1.en
summarize-ancestors(1) summarize-ancestors(1)

summarize-ancestors - Construct alignments with internal sequences for labeled nodes in query tree.

summarize-ancestors alignment -A fastas1 -T trees1 [OPTIONS]

Construct alignments with internal sequences for labeled nodes in query tree.

produces help message
[=arg(=1)] Show more log messages on stderr.

File of alignment samples
File of corresponding tree samples
factor by which to sub-sample trees

Newick tree with labelled ancestors
File with named groups
Minimum fraction to include a node.
Minimum fraction to include a group.

Add ancestral sequences to summary alignment:

% summarize-ancestors summary.fasta -A C1.P1.fastas -T C1.trees --nodes query.tree --groups query.tree
    

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

Benjamin Redelings.

Feb 2018