trees-consensus(1) | trees-consensus(1) |
trees-consensus - Find consensus trees and supported splits.
trees-consensus [OPTIONS] sampled-trees [sampled-trees ... sampled-trees]
Find consensus trees and supported splits.
Compute the majority consensus tree, skipping the first 10% of trees:
% trees-consensus newick.trees > c50.tree % trees-consensus newick.trees --skip=10% > c50.tree
Skip the first 100 trees:
% trees-consensus newick.trees --skip=100 > c50.tree
Skip the first 20% of trees and take every 10th tree thereafter:
% trees-consensus newick.trees --skip=20% -x10 > c50.tree
Compute the 50% (majority) and 80% consensus trees:
% trees-consensus newick.trees --consensus=0.5:c50.tree,0.8:c80.tree % trees-consensus newick.trees --consensus=0.5,0.8:c80.tree > c50.tree
Compute the MAP tree and write a summary of supported partitions:
% trees-consensus --map-tree=MAP.tree --report=partitions.txt
Compute the MAP tree and write it to the standard output:
% trees-consensus --map-tree=- --report=partitions.txt
BAli-Phy online help: <http://www.bali-phy.org/docs.php>.
Please send bug reports to <bali-phy-users@googlegroups.com>.
Benjamin Redelings.
Feb 2018 |