Bref(1) | General Commands Manual | Bref(1) |
Bref - Tool for compressing diploid reference VCF files for the Beagle program.
java -jar /usr/share/beagle/bref.jar [vcf]
or
java -jar /usr/share/beagle/bref.jar [bref]
Bref is a tool for compressing diploid reference VCF files.
Beagle performs genotype calling, genotype phasing, imputation of ungenotyped
markers, and identity-by-descent segment detection. Genotypic imputation
works on phased haplotypes using a Li and Stephens haplotype frequency
model. Beagle also implements the Refined IBD algorithm for detecting
homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.
https://faculty.washington.edu/browning/beagle/beagle.html
Beagle and Bref were written by Brian L. Browning.
This manual page was written by Dylan Aïssi <bob.dybian@gmail.com>, for the Debian project (but may be used by others).
June 2016 | 4.1 |