Bio::Tradis::RunTradis(3pm) | User Contributed Perl Documentation | Bio::Tradis::RunTradis(3pm) |
Bio::Tradis::RunTradis - Perform all steps required for a tradis analysis
version 1.4.5
Takes a fastq file with tags already attached, filters the tags matching user input, removes the tags, maps to a reference (.fa) and generates insertion site plots for use in Artemis (or other genome browsers), mapped BAM files for each lane and a statistical summary of the analysis.
use Bio::Tradis::RunTradis; my $pipeline = Bio::Tradis::RunTradis->new( fastqfile => 'abc', reference => 'abc', tag => 'abc', tagdirection => '5'|'3' ); $pipeline->run_tradis();
"run_tradis" - run complete analysis with given parameters
Carla Cummins <path-help@sanger.ac.uk>
This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
2020-01-11 | perl v5.30.0 |