DOKK / manpages / debian 12 / bio-tradis / tradis_comparison.1.en
TRADIS_COMPARISON(1) User Commands TRADIS_COMPARISON(1)

tradis_comparison - bio-tradis: compares two experimental conditions using the method of Dembek et al.

tradis_comparison [-h] [-f] [-t read cutoff] [-o outputfile.csv] [-p outputplot.pdf] --controls controls.txt --conditions conditions.txt

Compares two experimental conditions using the method of Dembek et al. mBio 2015. Read counts per gene are compared using edgeR. This analysis requires experimental replicates.

control libraries, generally growth in a permissive condition
libraries exposed to the experimental condition being compared

output filename
output filename for diagnostic plots
enable filtering on minimum read counts
if --filter is enabled, sets minimum read count necessary in one condition for a gene to be included in the comparison.

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

March 2017 tradis_comparison 1.3.1