| BAMSPLITDIV(1) | General Commands Manual | BAMSPLITDIV(1) |
bamsplitdiv - split BAM file into a set of BAM files
bamsplitdiv [options]
bamsplitdiv reads a BAM file via standard input and creates a set of output BAM files containing the alignments in the input. Given a positive natural number div bamsplitdiv will create div files. The alignments in the input file will be distributed to the output files in a round robin type scheme, i.e. entries 0, div, 2div, 3div, etc. will be written to the first output file, 1,div+1,2div+1, 3div+1, etc. to the second etc.
The following key=value pairs can be given:
div=<1>: number of output files
prefix=<filename> prefix for the create files. The created files will have names ${prefix}_000000.bam, ${prefix}_000001.bam, etc.
level=<-1|0|1|9|11>: set compression level of the output BAM file. Valid values are
If libmaus has been compiled with support for igzip (see https://software.intel.com/en-us/articles/igzip-a-high-performance-deflate-compressor-with-optimizations-for-genomic-data) then an additional valid value is
verbose=<1>: Valid values are
Written by German Tischler.
Report bugs to <germant@miltenyibiotec.de>
Copyright © 2009-2013 German Tischler, © 2011-2013
Genome Research Limited. License GPLv3+: GNU GPL version 3
<http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it. There is NO
WARRANTY, to the extent permitted by law.
| October 2013 | BIOBAMBAM |