DOKK / manpages / debian 12 / bioperl-run / bp_multi_hmmsearch.pl.1p.en
BP_MULTI_HMMSEARCH(1p) User Contributed Perl Documentation BP_MULTI_HMMSEARCH(1p)

multi_hmmsearch - perform a hmmsearch into multiple FASTA files using
an INDEX file

multi_hmmsearch -p hmm_file [-i] -f index_file

Not technically a Bio::Tools::Run script as this doesn't use any Bioperl or Bioperl-run components but it's useful.

  -p  HMM profile to use for the search.
  -f  INDEX file that contains a list of FASTA files for the multiple
      search.


  -i  Create a new index file with the resulting hmms files. This is
      useful if you want to pass this list as input arguments into
      another programs.
  -h  Show this documentation.

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  http://redmine.open-bio.org/projects/bioperl/


  Mauricio Herrera Cuadra <mauricio-at-open-bio.org>
2023-01-22 perl v5.36.0