| BP_GCCALC(1p) | User Contributed Perl Documentation | BP_GCCALC(1p) |
bp_gccalc - GC content of nucleotide sequences
bp_gccalc [-f/--format FORMAT] [-h/--help] filename or bp_gccalc [-f/--format FORMAT] < filename or bp_gccalc [-f/--format FORMAT] -i filename
This scripts prints out the GC content for every nucleotide sequence from the input file.
The default sequence format is fasta.
The sequence input can be provided using any of the three methods:
bp_gccalc filename
bp_gccalc -i filename
bp_gccalc < filename
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
Email jason@bioperl.org
Based on script code (see bottom) submitted by cckim@stanford.edu
Submitted as part of bioperl script project 2001/08/06
| 2021-08-15 | perl v5.32.1 |