bowtie2-inspect - wrapper for bowtie2-inspect-* index
bowtie2-inspect [options]*
<bt2_base>
Bowtie 2 version 2.5.0 by Ben Langmead (langmea@cs.jhu.edu,
www.cs.jhu.edu/~langmea)
- <bt2_base>
- bt2 filename minus trailing .1.bt2/.2.bt2
- By default, prints FASTA records of the indexed nucleotide sequences to
standard out. With -n, just prints names. With -s, just
prints a summary of the index parameters and sequences.
- --large-index
- force inspection of the 'large' index, even if a 'small' one is
present.
- --debug
- use the debug binary; slower, assertions enabled
- --verbose
- log the issued command
- -a/--across
<int>
- Number of characters across in FASTA output (default: 60)
- -n/--names
- Print reference sequence names only
- -s/--summary
- Print summary incl. ref names, lengths, index properties
- -o/--output
- Save output to filename (default stdout)
- -v/--verbose
- Verbose output (for debugging)
- -h/--help
- print this and message quit