BUSTOOLS(1) | User Commands | BUSTOOLS(1) |
bustools - manual page for bustools 0.42.0
bustools <CMD> [arguments] ..
bustools 0.42.0
Where <CMD> can be one of:
sort Sort a BUS file by barcodes and UMIs correct Error correct a BUS file umicorrect Error correct the UMIs in a BUS file count Generate count matrices from a BUS file inspect Produce a report summarizing a BUS file whitelist Generate a whitelist from a BUS file project Project a BUS file to gene sets capture Capture records from a BUS file merge Merge bus files from same experiment text Convert a binary BUS file to a tab-delimited text file extract Extract FASTQ reads correspnding to reads in BUS file predict Correct the count matrix using prediction of unseen species collapse Turn BUS files into a BUG file clusterhist Create UMI histograms per cluster linker Remove section of barcodes in BUS files compress Compress a BUS file inflate Decompress a BUSZ (compressed BUS) file version Prints version number cite Prints citation information
Running bustools <CMD> without arguments prints usage information for <CMD>
Usage: bustools <CMD> [arguments] ..
Where <CMD> can be one of:
sort Sort a BUS file by barcodes and UMIs correct Error correct a BUS file umicorrect Error correct the UMIs in a BUS file count Generate count matrices from a BUS file inspect Produce a report summarizing a BUS file whitelist Generate a whitelist from a BUS file project Project a BUS file to gene sets capture Capture records from a BUS file merge Merge bus files from same experiment text Convert a binary BUS file to a tab-delimited text file extract Extract FASTQ reads correspnding to reads in BUS file predict Correct the count matrix using prediction of unseen species collapse Turn BUS files into a BUG file clusterhist Create UMI histograms per cluster linker Remove section of barcodes in BUS files compress Compress a BUS file inflate Decompress a BUSZ (compressed BUS) file version Prints version number cite Prints citation information
Running bustools <CMD> without arguments prints usage information for <CMD>
The full documentation for bustools is maintained as a Texinfo manual. If the info and bustools programs are properly installed at your site, the command
should give you access to the complete manual.
December 2022 | bustools 0.42.0 |