sga2fps.pl - Convert SGA format into FPS format
- sga2fps.pl [options] <SGA file|stdin>
- where options are:
- -h|--help
- Show this stuff
- --db <path>
- Use <path> to locate Chrom Id Storable File 'chro_idx.nstorage'
- -f <feature>
- Set <feature> field
- -s|--species
<species>
- Assembly <species> (i.e hg18)
- --set0flag
- Set 0 flag at postion 29 of the FP line, forcing unoriented output
(default : blank)
This manpage was written by Andreas Tille for the Debian
distribution and
can be used for any other usage of the program.