avg_adm - Average using ADM
avg_adm [options] list0 [list1 ...]
Compute average-shape average-intensity images and deformation
maps using an active deformation model.
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard
output.
- --wiki
- Write list of command line options to standard output in MediaWiki
markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level
<integer>
- Set verbosity level.
- --verbose,
-v
- Increment verbosity level by 1 (deprecated; supported for backward
compatibility).
- --threads
<integer>
- Set maximum number of parallel threads (for POSIX threads and
OpenMP).
- --label,
-l
- Label mode (as opposed to grey)
- --set-padding
<float>
- Set padding value in input files [Default: disabled]
- --replace-padding
<float>
- Replace padding value in input files [Default: disabled]
- --pad-out
<double>, -p <double>
- Padding value for output file [Default: disabled]
- --jacobian,
-j
- Average Jacobian determinants of deformations.
- --auto-scale,
-a
- Auto-scale image intensities
- --char
- Output is 8 bits, signed [default: automatic]
- --byte
- Output is 8 bits, unsigned
- --short
- Output is 16 bits, signed
- --ushort
- Output is 16 bits, unsigned
- --int
- Output is 32 bits signed
- --float
- Output is 32 bits floating point
- --double
- Output is 64 bits floating point
- --no-scale-model,
-S
- Exclude scale from statistical deformation model
- --no-ref-model,
-R
- Exclude reference coordinate frame from deformation model
- --no-ref-data,
-r
- Exclude reference data from averaging
- --output
<string>, -o <string>
- Output file name [FORMAT:]path [Default: NONE]
- --input-warp
<string>, -I <string>
- Input file name for average warp [Default: NONE]
- --output-warp
<string>, -O <string>
- Output file name for average warp [Default: NONE]
- --with-affine,
-A
- Include affine component of first warp in output
- --nn
- Use nearest neigbor interpolation
- --cubic
- Use tri-cubic interpolation
- --replace-from
<string>
- Replace from pattern
- --replace-to
<string>
- Replace to pattern
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg
Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
http://www.fsf.org/licensing/licenses/gpl.html
Report bugs at http://nitrc.org/projects/cmtk/
CMTK is developed with support from the NIAAA under Grant
AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence
(N-CANDA): Data Integration Component. From April 2009 through September
2011, CMTK development and maintenance was supported by the NIBIB under
Grant EB008381.