Global Toolkit Options (these are shared by all CMTK tools)

--help

Write list of basic command line options to standard output.

--help-all

Write complete list of basic and advanced command line options to standard output.

--wiki

Write list of command line options to standard output in MediaWiki markup.

--man

Write man page source in 'nroff' markup to standard output.

--version

Write toolkit version to standard output.

--echo

Write the current command line to standard output.

--verbose-level <integer>

Set verbosity level.

--verbose, -v

Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>

Set maximum number of parallel threads (for POSIX threads and OpenMP).

Slice Orientation

--slice-axis

Define slice direction axis: this is the through-slice direction of the acquisition. Supported values: "guess-from-input", "axial", "sagittal", "coronal", "slice-x", "slice-y", "slice-z", where the default is "guess-from-input", or use one of the following:

--kernel-fwhm <double>

Gaussian kernel full width at half maximum (FWHM) in units of slice indexes. [Default: 1]

--kernel-radius <integer>

Truncate kernel radius to this many samples. By default, kernel width is determined to limit approximation error. [Default: 0]

--write-float

Write output image in floating point representation. By default, write using input image pixel data type.